Index

A

add() (ome_zarr.reader.Node method)

astronaut() (in module ome_zarr.data)

B

basename() (ome_zarr.io.ZarrLocation method)

C

check_format() (in module ome_zarr.writer) check_group_fmt() (in module ome_zarr.writer) coins() (in module ome_zarr.data) config_logging() (in module ome_zarr.cli) copy_metadata (ome_zarr.scale.Scaler attribute)

create() (in module ome_zarr.cli) (ome_zarr.io.ZarrLocation method) create_zarr() (in module ome_zarr.data) csv_to_labels() (in module ome_zarr.cli) csv_to_zarr() (in module ome_zarr.csv) CurrentFormat (in module ome_zarr.format)

D

detect_format() (in module ome_zarr.format) dict_to_zarr() (in module ome_zarr.csv)

download() (in module ome_zarr.cli) (in module ome_zarr.utils) downscale (ome_zarr.scale.Scaler attribute)

E

exists() (ome_zarr.io.ZarrLocation method)

F

finder() (in module ome_zarr.cli) Format (class in ome_zarr.format) format_implementations() (in module ome_zarr.format) FormatV01 (class in ome_zarr.format)

FormatV02 (class in ome_zarr.format) FormatV03 (class in ome_zarr.format) FormatV04 (class in ome_zarr.format) FormatV05 (class in ome_zarr.format) func (ome_zarr.scale.Scaler property)

G

gaussian() (ome_zarr.scale.Scaler method)

get_pyramid_lazy() (ome_zarr.reader.Plate method)

I

in_place (ome_zarr.scale.Scaler attribute) info() (in module ome_zarr.cli) (in module ome_zarr.utils)

init_store() (ome_zarr.format.FormatV01 method)

L

Label (class in ome_zarr.reader) labeled (ome_zarr.scale.Scaler attribute) Labels (class in ome_zarr.reader)

laplacian() (ome_zarr.scale.Scaler method) load() (ome_zarr.io.ZarrLocation method) LOCAL_MEAN (ome_zarr.scale.Methods attribute) local_mean() (ome_zarr.scale.Scaler method)

M

main() (in module ome_zarr.cli) make_circle() (in module ome_zarr.data) matches() (ome_zarr.reader.Label static method) (ome_zarr.reader.Labels static method) (ome_zarr.reader.Multiscales static method) max_layer (ome_zarr.scale.Scaler attribute) method (ome_zarr.scale.Scaler attribute) Methods (class in ome_zarr.scale) methods() (ome_zarr.scale.Scaler static method) module ome_zarr.cli ome_zarr.csv ome_zarr.data ome_zarr.format ome_zarr.io ome_zarr.reader ome_zarr.scale ome_zarr.utils ome_zarr.writer

Multiscales (class in ome_zarr.reader)

N

NEAREST (ome_zarr.scale.Methods attribute)

nearest() (ome_zarr.scale.Scaler method) Node (class in ome_zarr.reader)

O

ome_zarr.cli module ome_zarr.csv module ome_zarr.data module ome_zarr.format module ome_zarr.io module

ome_zarr.reader module ome_zarr.scale module ome_zarr.utils module ome_zarr.writer module OMERO (class in ome_zarr.reader)

P

parse_csv_value() (in module ome_zarr.csv)

parse_url() (in module ome_zarr.io) Plate (class in ome_zarr.reader)

R

Reader (class in ome_zarr.reader) RESIZE (ome_zarr.scale.Methods attribute)

resize_image() (ome_zarr.scale.Scaler method) rgb_to_5d() (in module ome_zarr.data) root_attrs (ome_zarr.io.ZarrLocation property)

S

scale() (ome_zarr.scale.Scaler method) Scaler (class in ome_zarr.scale)

Spec (class in ome_zarr.reader) store (ome_zarr.io.ZarrLocation property) strip_common_prefix() (in module ome_zarr.utils)

V

validate_coordinate_transformations() (ome_zarr.format.FormatV04 method) version (ome_zarr.io.ZarrLocation property)

view() (in module ome_zarr.cli) visible (ome_zarr.reader.Node property)

W

Well (class in ome_zarr.reader) write_image() (in module ome_zarr.writer) write_label_metadata() (in module ome_zarr.writer) write_labels() (in module ome_zarr.writer)

write_multiscale() (in module ome_zarr.writer) write_multiscale_labels() (in module ome_zarr.writer) write_multiscales_metadata() (in module ome_zarr.writer) write_plate_metadata() (in module ome_zarr.writer) write_well_metadata() (in module ome_zarr.writer)

Z

ZarrLocation (class in ome_zarr.io)

ZOOM (ome_zarr.scale.Methods attribute) zoom() (ome_zarr.scale.Scaler method)