ome-zarr-py

Tools for reading and writing multi-resolution images stored in Zarr filesets, according to the OME NGFF spec.

Note: The default version of OME-Zarr written by ome-zarr-py is v0.5, which uses zarr v3. OME-Zarr v0.5 is not yet supported by all OME-Zarr tools. See the documentation for more information on how to write other versions.

Features

• Command-line tool for reading and downloading OME-ZARR filesets.

• Python API for reading and writing OME-ZARR filesets.

• Used by the napari-ome-zarr plugin for viewing OME-ZARR filesets in napari.

Installation

Install the latest release of ome-zarr from PyPI:

pip install ome-zarr

or from conda-forge:

conda install -c conda-forge ome-zarr

License

Distributed under the terms of the BSD license, “ome-zarr-py” is free and open source software